Alignment of alleles: Channel catfish (Ictalurus punctatus) IGHV10S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   V   D   L   T   Q   S   A   S       V   L   V   K   P   G   D   S   F   S
  AY238370,IGHV10S3*01          GGT GTG GAT CTA ACT CAG TCA GCC TCT ... GTG CTC GTG AAA CCT GGA GAC TCG TTC TCC

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   S   C   R   I   S   V   S   N   Y   C                               I   N
  AY238370,IGHV10S3*01          ATC TCT TGT AGG ATC TCA GTG TCG AAC TAT TGT ... ... ... ... ... ... ... ATT AAC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   I   R   Q   P   T   G   K   A   L   E   W   L   G   Y   L   C   S   G   G
  AY238370,IGHV10S3*01          TGG ATA CGA CAA CCT ACT GGG AAA GCA CTG GAA TGG CTC GGA TAT TTG TGT AGC GGT GGT

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 N   T               N   L   K   D   T   M   K       S   K   I   S   F   S   Q
  AY238370,IGHV10S3*01          AAC ACT ... ... ... AAT CTC AAA GAC ACA ATG AAG ... AGC AAG ATC AGT TTC AGC CAG

                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   T   S   I   S   T   V   Y   L   R   G   Q   N   F   Q   T   E   D   T   A
  AY238370,IGHV10S3*01          GAC ACA TCC ATC AGC ACA GTT TAT TTA AGA GGA CAA AAC TTT CAG ACT GAG GAC ACG GCT

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 V   Y   Y   C   A   R
  AY238370,IGHV10S3*01          GTG TAT TAC TGT GCA AGA #c
#c: rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 06/11/2003
Author: Nathalie Bosc